From 1952-1981, Bishop Stuart College trained grade II and III teachers. In 1982 the College was transferred to Kibingo in Rwampara (currently Mbarara city) giving way to National Teachers College, Kakoba to train Diploma Teachers for Primary and Secondary Schools.
In March 2002, the Ankole Diocese Synod resolved to establish a University at Kakoba Hill, named Bishop Stuart University. In April 2004, Bishop Stuart University became affiliated to Uganda Christian University, Mukono and through this affiliation, Uganda Christian University started awarding Degrees, Diplomas, and Certificates to Bishop Stuart University students.
Bishop Stuart University was then licensed by National Council for Higher Education (NCHE) and was allowed to award Degrees, Diplomas, and Certificates starting with the 2006/2007 Academic Year until 2014 when the University received her charter from NCHE. This meant that the University would start awarding any Postgraduate and Undergraduate degree in any discipline as long as it’s accredited by NCHE.